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Recon-all correction script based on manual subcortical segmentation files

Key Investigators

• Jarrett Rushmore (Center for Morphometric Analysis, Massachusetts General Hospital, USA)
• Benoît Verreman (ETS, Canada)
• Sylvain Bouix (ETS, Canada)

Project Description

White and pial surfaces and parcellation from recon-all pipeline (7.4.1) need quite a few manual corrections. At the same time, 100 cases from HCP-YA dataset were manually segmented using HOA2 atlas (subcortical areas). The goal of the project is to leverage the latter to get better results with recon-all.

Objective

1. Add flexibility to the script (different cases of use: with or without ribbon/subcortical files)
2. Visually check the different scenario results of the script, and solve following region issues: hippocampus/amygdala, temporal lobe
3. Make the script easier to be used by novice users

Approach and Plan

1. All segmentation results will be computed beforehand
2. NAMIC project week participants may be invited to test the script

Progress and Next Steps

Illustrations

No response

Background and References

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